Applied Scientist Ii Salary in San Diego, CA

18 certified H-1B filings

According to TheRealSalaries.com analysis of official US Department of Labor filings (October 2024 - December 2025), the average H-1B salary for Applied Scientist Ii in San Diego is $163,856 — 35% above the national median of $121,514.

Section 1
$163,856
Average
$98,313
Min Est.
$294,940
Max Est.
18
Filings

Top Employers for Applied Scientist Ii in San Diego

CompanyAvg. SalaryFilings
Amazon.com Services LLC $163,856 18
Section 2

Applied Scientist Ii in Other Cities

Seattle, WA
$167,574
278 filings
New York, NY
$182,954
81 filings
Sunnyvale, CA
$193,257
79 filings
Bellevue, WA
$167,183
76 filings
Santa Clara, CA
$185,794
57 filings
Palo Alto, CA
$187,789
49 filings
Boston, MA
$171,178
23 filings
Arlington, VA
$166,993
16 filings

Other Roles in San Diego

Software Engineer ($131,320) Senior Software Engineer ($135,837) Staff Software Engineer ($171,398) Software Engineering Systems ($161,342) Software Development Engineer - Firmware ($164,449) Asics Engineer ($119,566) Senior Asics Engineer ($120,905) Software Development Engineer - Test ($159,760)
Section 3
Source: US Department of Labor LCA Disclosure Data. Updated: Q1 FY2025.